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<h1 id="index">Index</h1>

<div class="genindex-jumpbox">
 <a href="#A"><strong>A</strong></a>
 | <a href="#C"><strong>C</strong></a>
 | <a href="#D"><strong>D</strong></a>
 | <a href="#G"><strong>G</strong></a>
 | <a href="#M"><strong>M</strong></a>
 | <a href="#P"><strong>P</strong></a>
 | <a href="#R"><strong>R</strong></a>
 | <a href="#S"><strong>S</strong></a>
 | <a href="#T"><strong>T</strong></a>
 | <a href="#U"><strong>U</strong></a>
 | <a href="#W"><strong>W</strong></a>
 
</div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.arguments.args_check">args_check() (in module timsconvert.arguments)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.data_input.check_for_multiple_analysis">check_for_multiple_analysis() (in module timsconvert.data_input)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.convert.clean_up_logfiles">clean_up_logfiles() (in module timsconvert.convert)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.convert.convert_raw_file">convert_raw_file() (in module timsconvert.convert)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.data_input.dot_d_detection">dot_d_detection() (in module timsconvert.data_input)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.arguments.get_args">get_args() (in module timsconvert.arguments)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.timestamp.get_iso8601_timestamp">get_iso8601_timestamp() (in module timsconvert.timestamp)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.write.get_spectra_count">get_spectra_count() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.timestamp.get_timestamp">get_timestamp() (in module timsconvert.timestamp)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li>
    module

      <ul>
        <li><a href="timsconvert.html#module-timsconvert">timsconvert</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.arguments">timsconvert.arguments</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.classes">timsconvert.classes</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.constants">timsconvert.constants</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.convert">timsconvert.convert</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.data_input">timsconvert.data_input</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.parse">timsconvert.parse</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.timestamp">timsconvert.timestamp</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.timsconvert_gui_template">timsconvert.timsconvert_gui_template</a>
</li>
        <li><a href="timsconvert.html#module-timsconvert.write">timsconvert.write</a>
</li>
      </ul></li>
  </ul></td>
</tr></table>

<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.parse.parse_lcms_baf">parse_lcms_baf() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.parse.parse_lcms_tdf">parse_lcms_tdf() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.parse.parse_lcms_tsf">parse_lcms_tsf() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.parse.parse_maldi_plate_map">parse_maldi_plate_map() (in module timsconvert.parse)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.parse.parse_maldi_tdf">parse_maldi_tdf() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.parse.parse_maldi_tdf_iprm">parse_maldi_tdf_iprm() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.parse.parse_maldi_tsf">parse_maldi_tsf() (in module timsconvert.parse)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.populate_table">populate_table() (timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow method)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.retranslateUi">retranslateUi() (timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow method)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.data_input.schema_detection">schema_detection() (in module timsconvert.data_input)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow.setupUi">setupUi() (timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow method)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.classes.TimsconvertBafData.subset_ms1_frames">subset_ms1_frames() (timsconvert.classes.TimsconvertBafData method)</a>

      <ul>
        <li><a href="timsconvert.html#timsconvert.classes.TimsconvertTdfData.subset_ms1_frames">(timsconvert.classes.TimsconvertTdfData method)</a>
</li>
        <li><a href="timsconvert.html#timsconvert.classes.TimsconvertTsfData.subset_ms1_frames">(timsconvert.classes.TimsconvertTsfData method)</a>
</li>
      </ul></li>
  </ul></td>
</tr></table>

<h2 id="T">T</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li>
    timsconvert

      <ul>
        <li><a href="timsconvert.html#module-timsconvert">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.arguments

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.arguments">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.classes

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.classes">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.constants

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.constants">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.convert

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.convert">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.data_input

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.data_input">module</a>
</li>
      </ul></li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li>
    timsconvert.parse

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.parse">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.timestamp

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.timestamp">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.timsconvert_gui_template

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.timsconvert_gui_template">module</a>
</li>
      </ul></li>
      <li>
    timsconvert.write

      <ul>
        <li><a href="timsconvert.html#module-timsconvert.write">module</a>
</li>
      </ul></li>
      <li><a href="timsconvert.html#timsconvert.classes.TimsconvertBafData">TimsconvertBafData (class in timsconvert.classes)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.classes.TimsconvertTdfData">TimsconvertTdfData (class in timsconvert.classes)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.classes.TimsconvertTsfData">TimsconvertTsfData (class in timsconvert.classes)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="U">U</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.timsconvert_gui_template.Ui_TimsconvertGuiWindow">Ui_TimsconvertGuiWindow (class in timsconvert.timsconvert_gui_template)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.write.update_spectra_count">update_spectra_count() (in module timsconvert.write)</a>
</li>
  </ul></td>
</tr></table>

<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.write.write_lcms_chunk_to_mzml">write_lcms_chunk_to_mzml() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_lcms_mzml">write_lcms_mzml() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_maldi_dd_mzml">write_maldi_dd_mzml() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_maldi_ims_chunk_to_imzml">write_maldi_ims_chunk_to_imzml() (in module timsconvert.write)</a>
</li>
  </ul></td>
  <td style="width: 33%; vertical-align: top;"><ul>
      <li><a href="timsconvert.html#timsconvert.write.write_maldi_ims_imzml">write_maldi_ims_imzml() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_maldi_ims_iprm_imzml">write_maldi_ims_iprm_imzml() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_ms1_spectrum">write_ms1_spectrum() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_ms2_spectrum">write_ms2_spectrum() (in module timsconvert.write)</a>
</li>
      <li><a href="timsconvert.html#timsconvert.write.write_mzml_metadata">write_mzml_metadata() (in module timsconvert.write)</a>
</li>
  </ul></td>
</tr></table>



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